biochemistry

 

Which lipoprotein accumulates in the bloodsteam of patients with familial hypercholesterolemia?

  1. HDL
  2. LDL
  3. Chylomicron
  4. VLDL
  5. IDL

 

 

01. 01. Which of the following would occur in untreated diabetes?

A.     A.     Hypoglycemia with elevated blood sugar.

B.     B.     Ketosis and hypoglycemia.

C.    C.    Ketosis and elevated blood sugar.

D.    D.    Hyperglycemia accompanied by scurvy.

 

02. 02. A defect in which of the following enzymes is likely to have the most severe effect on protein digestion?

A.     A.     Amylase

B.     B.     Carboxypeptidase A

C.    C.    Chymotrypsin

D.    D.    Elastase

E.     E.     Trypsin

 

03. 03. Characteristics commonly found in conditions which involve abnormalities in porphyrin metabolism include all of the following EXCEPT

A.     A.     skin sensitivity.

B.     B.     neurologic disturbances.

C.    C.    decreased dietary requirement for protein

D.    D.    erythrocyte fragility.

E.     E.     liver disease

 

04. 04. Which of the following is not required in the diet of a healthy adult human?

A.     A.     cysteine

B.     B.     isoleucine

C.    C.    lysine

D.    D.    methionine

E.     E.     phenylalanine

 

05. 05. Hyponatraemia is usually found in all of following EXCEPT:

A.     A.     Severe liver disease

B.     B.     Bronchial carcinoma

C.    C.    Cushings syndrome

D.    D.    Ingestion of ecstasy

E.     E.     Untreated congestive cardiac failure

 

06. 06. Folic acid

A.     A.     is absorbed predominantly in the jejunum

B.     B.     body stores are adequate for 3 years

C.    C.    is effective treatment for alcohol-induced macrocytosis

D.    D.    bioavailability is improved by cooking

E.     E.     blood level is reduced in stagnant loop syndrome

 

07. 07. If a child develops cataracts and a lowering of intelligence after drinking milk regularly he/she is probably suffering from:

A.     A.     lactose intolerance.

B.     B.     diabetes.

C.    C.    galactosemia.

D.    D.    disaccharidase deficiency.

 

08. 08. Vitamin A deficiency can result in

A.     A.     weakness of left-right eye movement.

B.     B.     dermatitis, diarrhea, and dementia.

C.    C.    night blindness and Bitot's spots.

D.    D.    eye strain, sensitivity to light and cracks at corners of mouth.

E.     E.     increased fragility of red blood cell membranes.

 

09. 09. One reason that exercise is beneficial in the treatment of Type II diabetes mellitus is that

A.     A.     fatty acid synthesis is activated in the liver.

B.     B.     glucose transporters are activated in the liver.

C.    C.    glucose transporters are activated in the muscle.

D.    D.    ketone body synthesis is inhibited in the liver.

E.     E.     glycogen breakdown is inhibited in the muscle.

 

10. 10. A deficiency in glucose 6-phosphatase will cause all of the following EXCEPT:

A.     A.     Fasting hypoglycemia

B.     B.     Negative blood glucose response to galactose injection

C.    C.    Lactic acidosis

D.    D.    Hyperlipidemia

E.     E.     Abnormal glycogen structure

 

11. 11. G proteins are

A.     A.     growth factors

B.     B.     part of cell surface receptors

C.    C.    Immunoglobulins

D.    D.    Albumins

E.     E.     nuclear proteins

 

12. 12. Human breast milk

A.     A.     can be safely used in babies with galactosaemia

B.     B.     contains more protein than cow's milk

C.    C.    contains less fat than cow's milk

D.    D.    has a relatively high sodium content

E.     E.     contains less carbohydrate than cow's milk

 

13. 13. Bile acids

A.     A.     are formed in the pancreas from cholesterol

B.     B.     are conjugated with taurine and glycine before excretion into bile

C.    C.    are about 50% reabsorbed from the intestinal lumen

D.    D.    cannot be metabolised by intestinal bacteria

E.     E.     are synthesised at up to 10mg/day in normal individuals

 

14. 14. Protamine:  

A.     A.     is a basic protein

B.     B.     1mg antagonises 100 mg heparin

C.    C.    is a myocardial stimulant

D.    D.    is contraindicated in hepatic failure

E.     E.     is 60% protein bound  

 

15. 15. When the level of glucose in the blood becomes very low to the point a person feels faint or goes into a coma, the condition is called:

A.     A.     hypotension.

B.     B.     diabetes.

C.    C.    starvation.

D.    D.    hypoglycemia.

E.     E.     Diabetic ketosis.

 

16. 16. Following statement concerning nephritic syndrome are true EXCEPT:

A.     A.     There is an increase in the interstitial fluid volume and oedema.

B.     B.     There is renal retention of sodium and water.

C.    C.    There is an increase in glomerular capillary permeability to albumin leading to proteinuria.

D.    D.    Lipiduria may lead to the presence of oval fat bodies in the urine.

E.     E.     Hypoalbuminaemia (low plasma albumin concentration) is primarily due to decreased protein synthesis by the liver.

 

17. 17. If a person had glossitis, cheilosis and cataracts you might suspect a deficiency of:

A.     A.     niacin.

B.     B.     riboflavin.

C.    C.    vitamin C.

D.    D.    thiamin.

E.     E.     Vitamin A

 

18. 18. Which of the following plays a major role in regulating the elimination of alcohol from the body?

A.     A.     Liver alcohol dehydrogenase

B.     B.     muscle hexokinase

C.    C.    Brain acetaldehyde dehydrogenase

D.    D.    Kidney antidiuretic hormone

E.     E.     Lung respiratory rate

 

19. 19. which one of the following statements concerning gluconeogeenesis is false:

A.     A.     In mammals gluconeogenesis occurs in liver

B.     B.     In mammals gluconeogenesis occurs in adipose tissue

C.    C.    In mammals gluconeogenesis occurs in kidney

D.    D.    The pathway is stimulated by glucagons

E.     E.     The pathway is inhibited by insulin

 

20. 20. Tyrosine, in addition to being found in protein, can also be converted to:

A.     A.     Tryptophan.

B.     B.     Serotonin (in the brain).

C.    C.    Adrenalin (in the adrenal gland).

D.    D.    thyroid hormones.

E.     E.     ACTH

01. During lyposomal digestion lipid is oxidized to a chemically heterogeneous pigmented substance called:

A.      xanthocyanin

B.      lipofuscin

C.      melanin

D.      lectoferrin

E.      none of above

 

02. Which of the following lipids contains phosphate?

A.      cholesterol

B.       cerebroside

C.       testosterone

D.      diacylglycerol

E.       sphingomyelin

F.       ceramide

 

03. The major connective tissue matrix component that is degraded in patients with emphysema is

A.      collagen.

B.      Mucopolysaccharide

C.      Elastin

D.      basement membrane

E.      gamma globulins

 

04. Proteins in the blood, which control rates of chemical reactions, and are called chemical messengers, are known as:

A.      catalysts.

B.      enzymes.

C.      amino acids.

D.      hormones.

E.      Free fatty acids

 

05. Acute intermittent porphyria is the result of a defect in the biosynthetic pathway for:

A.      collagen

B.      corticosteroid

C.      fatty acid

D.      glucose

E.      heme

 

06. Persons suffering from Von Gierke's disease

A.      cannot convert glucose-6-phosphate to glucose

B.      have enlarged livers

C.      cannot convert glycogen to glucose

D.      All of the above are correct

 

07. The intracellular triglyceride lipase in adipose tissue is:

A.      activated by the action of insulin.

B.      not affected by adrenalin.

C.      inhibited when phosphorylated by the cAMP dependent protein kinase.

D.      activated by the action of glucagon.

E.      inhibited by malonyl CoA.

 

08. Which of the following antibiotics might allow the formation of a peptide dimer?

A.      Erythromycin

B.       Chloramphenicol

C.       Tetracycline

D.      Streptomycin

 

09.  All of the following statements regarding albumin are true EXCEPT:

A.      has a molecular weight of 69000 with a strong negative charge on its surface

B.      is synthesized by the hepatocytes at the rate of 9-12gm/day in a healthy adult

C.      generates oncotic pressure because of its high mol weight

D.      has a degradation half-life of 18 days

E.      can be present in urine in individuals on prolonged standing

 

10. In a long-term fast (more than 30 hours) most of the blood glucose is derived from

A.      acetyl-CoA.

B.      amino acids.

C.      muscle glycogen.

D.      lactic acid.

E.      liver glycogen.

 

11. When cells in the brain shrink:

A.      the production of antidiuretic hormone ceases.

B.      the kidneys start excreting more water.

C.      they accumulate a lot of water.

D.      the thirst signal is turned on.

 

12. If a person absorbs excessive amounts of iron, the condition is called:

A.      muscle rigor.

B.      anemia.

C.      hemochromatosis.

D.      the hemoglobin syndrome.

E.      Hemolytic jundice

 

13. An enzyme which joins DNA molecules together is called

A.      a restriction endonuclease.

B.      a DNA lyase

C.      a DNA ligase.

D.      a DNA polymerase.

E.      a reverse transcriptase

 

14. The DNA/histone 'beads' are called:

A.      Polysomes.

B.      Mesosomes.

C.      Nucleosomes.

D.      Lysosomes.

 

15. Which of the following are NOT directly coded by base sequences in DNA:

A.      structural proteins

B.      enzymes

C.      transfer RNAs

D.      lipid membranes

E.      ribosomal RNAs

 

16. Which of the following hormonal effects is significant in muscle but not in liver?

A.      Epinephrine stimulated glycogenolysis

B.      Insulin stimulated glycogen synthesis

C.      Insulin stimulated glucose transport

D.      Glucagon stimulated gluconeogensis

E.      Glucagon stimulated glycogenolysis

 

17. In heart cells deprived of oxygen during a myocardial infarction, the PRIMARY cause of the reduction in ATP synthesis is:

A.      inhibition of hexokinase.

B.      inhibition of phosphofructokinase- 1.

C.      reduction in the rate of the TCA cycle.

D.      reduction in the rate of pyruvate oxidation.

E.      reduction in the rate of mitochondrial electron transport.

 

18. Which of the following would most likely lead to milky white serum in the fasting state?

A.      An excess of lipoprotein lipase

B.      A deficiency of Apolipoprotein CII

C.      An excess of LDL receptors

D.      A deficiency of nascent HDL

E.      An excess of lecithin cholesterol acyltransferase (LCAT)

 

19. The two enzyme catalyzed reactions that utilize cobalamin (from Vitamin B12) as a cofactor are the ones converting:

A.      methylmalonyl-CoA to succinyl CoA and homocysteine to methionine.

B.      aspartate to oxaloacetate and glutamate to y-aminobutyric acid (GABA).

C.      tryptophan to serotonin and tyrosine to 3,4dihydroxyphenylalanine (DOPA).

D.      norepinephrine to epinephrine and lysine to trimethyllysine.

E.      valine to a-ketoisovaleric acidand a-ketoisovaleric acid to isobutyryl COA.

 

20. The biochemical defect in the lysosomes of cystinotic individuals is the inability to:

A.      hydrolyze peptides containing cysteine.

B.      oxidize cysteine to cystine.

C.      transport protons.

D.      transport cystine.

 

After 10 hours of fasting a pacient has large liver glicogen deposits with short branches that contain only one glucose unit. The most likely abnormality is caused by defective:

 

 

A.

B.

C.

D.

 

glicogenin

proteinkinase A

alfa-1,6-glucosidase

4:4 trasferase



Question 2.

 

      Which one of the following metabolic changes is specific to starvation ?

 

 

A.

B.

C.

D.

 

the brain starts to use ketone bodies for energy

red blood cells degrades glucose to lactate

muscle increses its use of ketone bodies

adipose cells convert glucose to glicerol



Question 3.

 

      A 14-year-old boy with type 1 diabetes melitus missed two insulin injections. What physiopathological changes would you expect ?

 

 

A.

B.

C.

D.

 

increased glucose use to produce ketone bodies

increased production rate of triacilglicerol storage

increased production of 3 hidroxibutiric acid

decreased glicosilation of Hb A1c



Question 4.

 

      During a game a football player metabolised to carbon dioxide and water saturated fatty acids with 14-carbons. What is the appropiate number of ATP moles produced by 1 mole of this fatty acid ?

 

 

A.

B.

C.

D.

 

100

112

96

118



Question 5.

 

      Gluconeogenesis from glycerol:

 

 

A.

B.

C.

D.

 

oxaloacetate is an intermediar product

requires 2 moles of ATP

GTP is consumed to produce phosphoenolpyruvate

fructose-6 phosphatase is activated



Question 6.

 

      A 30-year-old man strarts bodybuilding one hour twice a week. If the energy is produced during gligolisis where glucose is converted to lactate which one of the following statements is most appropiate ?

 

 

A.

B.

C.

D.

 

2 moles of NADH is produced from 1 mole of glucose

NADP is produced in large quantities

fructose-1,6-biphosphatase is involved

2 moles of ATP from 1 mole of glucose is produced



Question 7.

 

      Which one of the following blood lipoproteins has the highest colesterol content ?

 

 

A.

B.

C.

D.

 

VLDL

LDL

HDL

IDL



Question 8.

 

      What type of interactions is not involved in tertiary structure of a protein

 

 

A.

B.

C.

D.

 

hidrogen bonds between separate polipeptide chains

covalent disulfide bonds

hidrophobic interactions

electrostatic interactions



Question 9.

 

      A high protein diet is associate with:

 

 

A.

B.

C.

D.

 

negative nitrogen balance with high biologic value proteins

increased kidney stress even with high-quality proteins

kwashiorkor

obesity



Question 10.

 

      Which one from the following is an essential aminoacid with non-ionisable side chain?

 

 

A.

B.

C.

D.

 

proline

treonine

asparagine

glutamine

 

Q-1   What is the importance of enzymes in living systems?

 A-1   Enzymes are the reaction catalysts of the biological systems.

They have extraordinary catalytic power, often greater than that of synthetic catalysts. They have high degree of substrate specificity & accelerate specific chemical reactions. They function in an aqueous medium under very mild conditions of temperature& pH. Very few non-biological catalysts show all these properties.

 

Q-2   If enzymes are not present in body what will happen?

 A-2   The biochemical reactions taking place in living cells at body temperature at sufficiently rapid in a regular order. Such reactions would have been extremely slow, had they not been catalyzed by enzymes, which are present in every living cell and can also act independently of the cell. (e.g. hydrolysis of starch by salivary amylase).

 

Q-3  Were enzyme actions were known in earlier time?

A-3  Yes, Biological catalysis was first recognized  & described in the early 1800 in studies of digestion of meat by secretions of stomach & conversion of starch into sugar by saliva & various plant extracts.  In 1850 Louise Pasteur concluded that fermentation of sugar into alcohol by yeast is catalyzed by” FERMENTS “& later named than enzymes, are inseparable from living yeast cells, a view that prevailed for many years.

 

Q-4  What was Buchner’s important discovery regarding enzyme? (Or fermentation?)

A-4  In 1897 Buchner showed yeast extract (cell free) could ferment sugar to alcohol. This encouraged biochemists to attempt the isolation of many different enzymes & to examine their catalytic properties

 

Q-5  What was the important discovery made by James Sumner?

 A-5 In 1926 James Sumner crystallized UREASE& found it is as a protein and postulated that all enzymes are proteins. This idea remained controversial for some time.

 

Q-6  What was contribution of J.B.S.HALDANE regarding enzyme?

A-6  During this period (1930) J.B.S.HALDANE wrote a treatise entitled enzymes, even though molecular nature of enzymes was not fully yet appreciated. It contained remarkable suggestions of weak bonding interactions and substrate catalyzed reaction.    

 

Q-7  What is an enzyme?

A-7  Enzymes are the reaction catalysts of the biological systems. They are protein in nature (With exception of small group of catalytic RNA molecules). Molecular weight ranges from 12000 to over million. They are specific in action e.g. Urease Their catalytic activity depends upon the integrity of their native protein conformation. (If enzyme is denatured or dissociated into subunits catalytically activity is usually lost)

The enzymes carry out transformation of molecules and also mediate transformation of energy e.g. PHOTOSYNTHESIS

 

Q-8  What are simple and complex enzymes?

A-8  Some enzymes require no chemical groups other than amino acids for activity, Enzymes composed of only protein are known as simple enzymes. Complex enzyme composed of protein plus a relatively small organic molecule, (which is required for enzyme activity)

 

 Q-9   What is apo-enzyme?

 A-9   Apo-enzyme is the protein part of an enzyme without any cofactors or prosthetic group that may be required for the enzyme to be functional. The apo-enzyme is catalytically inactive.

 

Q-10  What is coenzyme or prosthetic group?

A-10   A non-protein component of an enzyme, which is required for catalytic activity, is known as co-enzyme or prosthetic group.

 

Q-11  What is co-factor?

A-11  Is small organic or inorganic molecules that an apo-enzyme requires for its activity. E.g. Lysine oxidase copper is loosely bound

 

Q-12  What is the difference between prosthetic group and co-enzyme?

A-12. A coenzyme or metal ion that is COVALENTLY bound to the enzyme protein is called prosthetic group. For e.g. in the cytochromes, the heme prosthetic group is very tightly bound and requires strong acids to dissociate from its apo enzyme.

 

Q-13  Do some Enzymes contain vitamin derivatives?

A-12  YES, Many prosthetic groups and coenzymes are water-soluble derivatives of vitamins. It should be noted that the main clinical symptoms of dietary vitamin insufficiency generally arise from the malfunction of enzymes, which lack sufficient cofactors derived from vitamins to maintain homeostasis.

 

 Q-13 What is a holo enzyme?

 A-13 A complete catalytically active enzyme together with its coenzyme and/or metal ions called a holoenzyme.

            Apo-enzyme  + co enzyme ==holoenzyme

 

Q-14  What is metalloenzyme and metal activated enzymes?

A-14  Enzymes require a metal in their composition (such as Fe+2,Mg2+. Mn2+,Zn2+ ) are known as metalloenzymes if they bind and retain their metal atom(s) under all conditions, that is with very high affinity. Those, which have a lower affinity for metal ion, but still require the metal ion for activity, are known as metal-activated enzymes.

 

Nomenclature

 

Q-15  How enzymes are named?

A-15  Many enzymes have been named by adding the suffix “-ase” to the name of their substrate or to a word or phrase describing their activity. e.g. UREASE catalyze hydrolysis of urea, MALTASE act on maltose, and DNA polymerase catalyze the synthesis of DNA.  Other enzymes such as PEPSIN and TRYPSIN have names they do not denote their substrates.

 

Q-16 What is IUB system?

A-16  Sometimes the enzyme may have two or more names, or two different enzymes have the same name. Because of such ambiguities, and ever increasing number   of newly discovered enzymes a system for naming and classifying enzymes has been adopted by inter national agreement, International Union of Biochemistry (IUB-system)

 

Q-17  How enzymes are classified according to IUB system?

A-17  According to IUB system enzymes are grouped in six major classes.

Each with sub classes based on the type of reaction catalyzed. Systemic classification of enzymes based on numbering system is used. Each enzyme is assigned a code number or EC (enzyme commission number) four-digit classification number and a systematic name, which identifies the reaction catalyzed.

 

Q-18  According to IUB system which enzymes are included in group 1?

A-18  OXIDO-REDUCTASE      (EC-1)

Enzymes of this group add or remove hydrogen atoms during the catalysis. They include dehyrogenases & oxidases, and are mostly concerned with biological oxidation.

Dehydrogenases removes H+ from substrate in the presence of H+ acceptor group. e.g. Lactate Dehydrogenase. Enzymatic action can be represented by:                            

                       AH2 +B  à A + BH2

OXIDASES – transfer two electrons from the donor to oxygen resulting usually in hydrogen peroxide formation (H2O2) e.g. Glucose oxidase. CYTOCHROME oxidase produces H2O rather than H2O2. Oxygenases catalyze the incorporation of oxygen into a substrate.

 

Q-19  According to IUB system which enzymes are included in group 2?

A-19  TRANSFERASES    (EC-2)

These enzymes transfer functional groups between donors and acceptors.

The AMINO,  ACYL, PHOSPHATE, ONE CARBON and GLYCOSYL are the major groups that are transferred. E.g.

A— X+ B    à     A+ B—X

A. METHYL group---àe.g. Transmethylase

B. ALDEHYDE or KETONIC group e.g. Transaldolase or transketolase.

C. ACYL GROUP      e.g.Aceyltransferase

D. SUGAR GROUP e.g.       Glucosyltransferase

E. AMINO-KETO GROUP- Aminotransferase or transaminases

F. KINASES are specialized trnsferases that regulate metabolism by transferring phosphate from ATP to other moleculs e.g. Hexokinase:

                           ATP +Glucose -----àG-6-P+ ADP

 

Q-20  According to IUB system which enzymes are included in group 3? 

A-20  HYDROLASES    (EC-3)

A special class of transferases in which the donor group is transferred to water. The generalized reaction involves the hydrolytic cleavage of C-O, C-N, O-P and C-S bonds. In other words enzymes, which add, water to the substrate and hydrolyze or decompose it to give products.

              A—B + H2O à AH+ BOH

1. LIPASES-------e.g. Glycerol ester hydrolase

2. PHOSPHATASES------e.g.Glucose-6-Phosphatase

3. CHOLINE ESTERASE hydrolysases acetylcholine

4. PEPTIDASES-----hydrolyses peptides

5. NUCLEASES     e.g.nucleotidase, nucleosidase

6. CARBOHYDRASES e.g. Amylase act on amylose Lactase, Maltase

7. Enzymes acting on C—N linkage   Urease converts urea into ammonia, Asparginase. Glutaminase, Arginase

 

Q-21  According to IUB system which enzymes are included in group 4?

A-21  LYASES   (EC4)

 Lyases add or remove water, ammonia, or carbon dioxide from the substrates.

                           A-B + X-Y   ---- >  A-X  +  B-Y

1. DECARBOXYLASE removes CO2 from a orb keto acids or aminoacids.

2. Carbonic anhydrase

3. Cysteine desulfurase

 

Q-22  According to IUB system which enzymes are included in group5?

A-22  ISOMERASES    (EC5)

A hetrogeneous group of enzymes catalyze transfer of groups within molecules to yield isomeric forms e.g. isomerazition of!  1) Optical isomers 2) geometrical isomers

                                                  A-----à A’

1. Epimerases or Racemases catalyze inversion at asymmetric carbon atoms

2. MUTASES involve intramolecular transfer of a group such as a phosporyl

3. CIS-TRANS ISOMERASE e.g. all trans retinene isomerase

 

Q-23  According to IUB system which enzymes are included in group 6?

A-23  LIGASES   (EC6)

TO liagate means to bind, Formation of C-C, C-S, C-O& C-N bonds by condensation reactions. These enzymes carry out synthetic reactions where two molecules joined at the utilization of a “high energy phosphate bond of ATP. ”

                                REACTION:     A+B---à A-B

1. Pyruvate carboxylase   Pyruvate+CO2+ATP-----àOxaloacetate+ ADP+Pi

2. GLUTAMINE SYNTHETASE

3. Acetyl Co A CARBOXYLASE

 

Q-24  The following enzyme is classified as EC –2.7.1.1.  What does this mean?

A-24  The name of the enzyme catalyzing following reaction is ATP:glucose phospo transferase. Its enzyme classification number (E.C.number) is 2.7.1.1

            ATP+ D-Glucose---àD-Glucose-6-phosphate+ ADP

The first digit (2) denotes the class number (transferase)

The second digit (7) denotes sub-class - phospo transferase;

The third digit  (1)-Hydroxyl group as an acceptor;

The fourth digit (1) D-glucose as the phosphate group acceptor.

When the systematic name of an enzyme is long or cumbersome, a trivial name may be used in this case Hexokinase.

How glutamete is a prominent intermediate in nitrogen elimination?

A21.

Q22. Which amino acid related reaction is therapeutically significant?

A22.

 

Q23. How clinically important are sterospecific amino acid oxidases?

A23.

 

 

Q24. Discribe the role and significance of glutamate dehydrogenase?

A24.

The reaction catalyzed by glutamate dehydrogenase is:

 

NH4+ + α -ketoglutarate + NAD (P) H + H+ <----> glutamate + NAD (P)+ + H2O

 

Glutamate dehydrogenase can utilize either NAD orNADP as cofactor.

 

 

Q25. Describe the role and significance of glutamine synthase.

A25.

The reaction catalyzed by glutamine synthase is:

 

glutamate + NH4+ + ATP -------> glutamine + ADP + Pi + H+

 

The glutamine synthatase reaction is also important in several respects. First it produces glutamine, one of the 20 major amino acids. Second, in animals, glutamine is the major amino acid found in the circulatory system.

 

Its role there is to carry ammonia to and from various tissues but principally from peripheral tissues to the kidney, where the amide nitrogen is hydrolyzed by the enzyme glutaminase (reaction below); this process regenerates glutamate and free ammonium ion, which is excreted in the urine.

 

glutamine + H2O -------> glutamate + NH3

 

Note that, in this function, ammonia arising in peripheral tissue is carried in a nonionizable form, which has none of the neurotoxic or alkalosis-generating properties of free ammonia.

 

Q26. What is Urea Cycle?

A26. About 80% of the excreted nitrogen is in the form of urea, which is also largely made in the liver, in a series of reactions that are distributed between the mitochondrial matrix and the cytosol. The series of reactions that form urea is known as the Urea Cycle or the Krebs-Henseleit Cycle.

 

Q27. What are essential features of the urea cycle?

A27. The essential features of the urea cycle reactions and their metabolic regulation are as follows:

1.      1.      Arginine from the diet or from protein breakdown is cleaved by the cytosolic enzyme arginase, generating urea and ornithine.

2.      2.       Ornithine arising in the cytosol is transported to the mitochondrial matrix, where ornithine transcabamoylase catalyzes the condensation of ornithine with carbamoyl phosphate, producing citrulline. The energy for the reaction is provided by the high-energy anhydride of carbamoyl phosphate.

3.      3.       The product, citrulline, is then transported to the cytosol, where the remaining reactions of the cycle take place.

4.      4.      In a 2-step reaction, catalyzed by cytosolic argininosuccinate synthetase, citrulline is converted to argininosuccinate. The reaction involves the addition of AMP (from ATP) to the amido carbonyl of citrulline, forming an activated intermediate on the enzyme surface (AMP-citrulline), and the subsequent addition of aspartate to form argininosuccinate.

5.      5.      Arginine and fumarate are produced from argininosuccinate by the cytosolic enzyme argininosuccinate lyase. In the final step of the cycle arginase cleaves urea from aspartate, regenerating cytosolic ornithine, which can be transported to the mitochondrial matrix for another round of urea synthesis.

 

Beginning and ending with ornithine, the reactions of the cycle consumes 3 equivalents of ATP and a total of 4 high-energy nucleotide phosphates. Urea is the only new compound generated by the cycle; all other intermediates and reactants are recycled.

 

 

Q28. How the regulation of the Urea Cycle takes place in the body?

A28.

The urea cycle operates only to eliminate excess nitrogen.

On high-protein diets the carbon skeletons of the amino acids are oxidized for energy or stored as fat and glycogen, but the amino nitrogen must be excreted.

To facilitate this process, enzymes of the urea cycle are controlled at the gene level.

When dietary proteins increase significantly, enzyme concentrations rise. On return to a balanced diet, enzyme levels decline. Under conditions of starvation, enzyme levels rise as proteins are degraded and amino acid carbon skeletons are used to provide energy, thus increasing the quantity of nitrogen that must be excreted.


Q29.
What happens when excretion of ammonia is deranged?

A29. Built up of ammonia is neurotoxic. Marked brain damage is seen in cases of failure to make urea via the urea cycle or to eliminate urea through the kidneys. The result of either of these events is a buildup of circulating levels of ammonium ion. Aside from its effect on blood pH, ammonia readily traverses the brain blood barrier and in the brain is converted to glutamate via glutamate dehydrogenase, depleting the brain of α-ketoglutarate. As the α-ketoglutarate is depleted oxaloacetate falls correspondingly, and ultimately TCA cycle activity comes to a halt. In the absence of aerobic oxidative phosphorylation and TCA cycle activity, irreparable cell damage and neural cell death ensue.

 

What are vitamins?

A01.

 

Q02. How chemical structures of water-soluble vitamins are related to their functions?

Q02. In general, the water soluble vitamins consists of:

o       o       Derivatives or substituted derivatives of sugars (vit-C),

o       o       Derivatives of pyridine (niacin, B6),

o       o       Derivatives of purines and pyrimidines (folic acid, B2, B1),

o       o       Amino acid-organic acid complex (folic acid, biotin, pantothenic acid) and

o       o       A porphyrin-nucleotide complex (B12).

These structurally diverse water-soluble vitamins act:

o       o       As enzyme activators and coenzymes (B1, B2, B6, B12, pantothenic acid, folic acid, biotin, niacin)

o       o       As redox agent on enzyme reactions (Vit-C, B2, B12, folic acid, niacin)

 

Q03. Describe briefly the structure of thiamine and its active form.

A03.

·        ·        Thiamine is also known as vitamin B1.

·        ·        Thiamin is derived from a substituted pyrimidine and a thiazole, which are coupled by a methylene bridge.

·        ·        Thiamin is rapidly converted to its active form, thiamin pyrophosphate, TPP, in the brain and liver by a specific enzyme, thiamin diphosphotransferase.

·        ·        TPP is necessary as a cofactor for the pyruvate and a-ketoglutarate dehydrogenase catalyzed reactions as well as the transketolase catalyzed reactions of the pentose phosphate pathway.

 

Q04. What is dietary requirement of Thiamine (Vitamin B1)?

A04. The dietary requirement for thiamine is proportional to the caloric intake of the diet and ranges from 1.0 - 1.5 mg/day for normal adults. If the carbohydrate content of the diet is excessive then an increased thiamine intake will be required. Requirement is increased in pregnancy and lactation. It also depends of intestinal synthesis and absorption and fat content of diet (increased Pyruvate).

 

Q05. What are dietary sources of Vitamin B1?

A05. Following are the dietary sources of Vitamin B1:

High: 1000-10,000microgram/100g

Wheat germ, rice bran, soybean flour yeast and ham.

Medium: 100-1000microgram/100g

Peanuts, pecan, walnut, almonds etc. sprouts,

Broccoli, cauliflower, potatoes, beans,

Eggs, milk and beef whole grain cereals and breads. 

Low: 10-100microgram/100g

Apples, berries, banana, oranges, dates

Beet, cabbage, carrot, radish, spinach etc.

 

Q06. Describe biochemical role of thiamine.

A06.

 

Q07. Describe clinical manifestations of thiamine deficiency.

A07:

·        ·        Vitamin B1 is necessary to breakdown & release energy from carbohydrates. It is also necessary for the structure of the nerve membranes.

 

Q08. Describe briefly the structure of Riboflavin (Vitamin B-2) and its biochemical role.

A08.

 

Q09. What is dietary requirement of Riboflavin (Vitamin B-2) and what are dietary sources of it?

A09. The normal daily requirement for riboflavin is 1.2 - 1.7 mg/day for normal adults.

Following are the dietary sources of Vitamin B-2:

High: 1000-10,000microgram/100g

Beef, chicken, pork, yeast.

Medium: 100-1000microgram/100g

Avocados, currents, asparagus, beans, sprouts, egg, milk, nuts.

Low: 10-100microgram/100g

Apples, banana, oranges, dates, carrot, rice

 

Q10. Describe clinical manifestations of riboflavin deficiency.

A10. Symptoms associated with riboflavin deficiency include: inflammation or open sores at the corners of the mouth or lips, a purple -red inflamed tongue, angular stomatitis, glossitis, cheilosis, photophobia & seborrheic dermatitis (dandruff).

 

Riboflavin decomposes when exposed to visible light. This characteristic can lead to riboflavin deficiencies in newborns treated for hyperbilirubinemia by phototherapy.

 

Riboflavin deficiency is often seen in chronic alcoholics due to their poor dietetic habits.

 

Q11. Describe briefly the structure of Niacin and its biochemical role.

A11.

 

Q12. What is dietary requirement of Niacin and what are dietary sources of it?

A12. The recommended daily requirement for niacin is 13 - 19 niacin equivalents (NE) per day for a normal adult. One NE is equivalent to 1 mg of free niacin).

Following are the dietary sources of Vitamin B-2:

High: 10-100mg/100g

Peanut, rice bran, liver, heart, Beef, chicken, tuna, yeast.

Medium: 1-10mg/100g

Avocados, dates, figs, beans, sprouts, nuts.

Low: 0.1-1.0mg/100g

Apples, banana, berries, melon, peach, oranges, sprouts, tomato

 

Q13. Describe clinical manifestations of Niacin deficiency.

A13.

·        ·        A diet deficient in niacin (as well as tryptophan) leads to glossitis of the tongue, dermatitis, weight loss, diarrhea, depression and dementia.

·        ·        Deficiency in niacin causes pellagra (rough skin). Pellagra involves the skin and digestive and nervous system. Symptoms are the 4 D's: Dermatitis, Diarrhea, Dementia, & Death. Niacin also has vasodilating activity.

·        ·        Several physiological conditions (e.g. Hartnup disease and malignant carcinoid syndrome) can lead to niacin deficiency. 

·        ·        In Hartnup disease tryptophan absorption is impaired and in malignant carcinoid syndrome tryptophan metabolism is altered resulting in excess serotonin synthesis.

·        ·        Certain drug therapies (e.g. isoniazid) can lead to niacin deficiency. Isoniazid (the hydrazide derivative of isonicotinic acid) is the primary drug for chemotherapy of tuberculosis.

·        ·        Nicotinic acid (but not nicotinamide) when administered in pharmacological doses of 2 - 4 g/day lowers plasma cholesterol levels and has been shown to be a useful therapeutic for hypercholesterolemia. The major action of nicotinic acid in this capacity is a reduction in fatty acid mobilization from adipose tissue. Although nicotinic acid therapy lowers blood cholesterol it also causes a depletion of glycogen stores and fat reserves in skeletal and cardiac muscle. Additionally, there is an elevation in blood glucose and uric acid production. For these reasons nicotinic acid therapy is not recommended for diabetics or persons who suffer from gout.

 

Q14. Describe briefly the structure of Vitamin B-6 and its biochemical role.

A14.

·        ·        Vitamin B6 is a component of a coenzyme.

 

Q15. What is dietary requirement of Vitamin B-6 and what are dietary sources of it?

A15. The requirement for vitamin B6 in the diet is proportional to the level of protein consumption ranging from 1.4 - 2.0 mg/day for a normal adult.

Following are the dietary sources of Vitamin B-6:

High: 1000-10,000mcg/100g

Walnut, peanut, wheat germ, brown rice, yeast, liver (Beef), herring, and

Salmon.

Medium: 100-1000mcg/100g

Banana, Avocados, grapes, pears. Cabbage, carrots, peas, potatoes, tomatoes, spinach, soybean, wheat, butter and eggs.

Low: 10-100mcg/100g

Apples, oranges, raisins, watermelon, asparagus, bens, lettuce, onion, cheese and milk

 

Q16. Describe clinical manifestations of Vitamin B-6 deficiency.

A16. Deficiency of Vitamin B6 can cause convulsions, lethargy, mental changes & retardation, anemia, and skin inflammation.

Deficiencies of vitamin B6 are rare and usually are related to an overall deficiency of all the B-complex vitamins.

Isoniazid (see niacin deficiencies above) and penicillamine (used to treat rheumatoid arthritis and cystinurias) are two drugs that complex with pyridoxal and pyridoxal phosphate resulting in a deficiency in this vitamin.

 

Q17. Write a short note on Pantohenic acid.

A17.

·        ·        Deficiency of pantothenic acid is extremely rare due to its widespread distribution in whole grain cereals, legumes and meat.

 

 

Q18. Write a short note on Biotin.

A18. Biotin is the prosthetic group for number of caboxylation reactions e.g.

·        ·        Pyruvate carboxylase (for synthesis of oxaloacetate for gluconeogensis and replenishment of citric acid cycle.

·        ·        Acetyl-CoA carboxylase (fatty acid biosynthesis) and

·        ·        Propionyl-CoA carboxlase (methionine, leucine and valine metabolism)

Biotin is found in numerous foods and also is synthesized by intestinal bacteria and as such deficiencies of the vitamin are rare.

Deficiencies are generally seen only after long antibiotic therapies, which deplete the intestinal fauna or following excessive consumption of raw eggs. The latter is due to the affinity of the egg white protein, avidin, for biotin preventing intestinal absorption of the biotin.

 

Q19. Describe briefly the structure of Vitamin B-12 and its biochemical role.

A19.

·        ·        Vitamin B12 is composed of a complex tetrapyrrol ring structure (corrin ring) and a cobalt ion in the center. It is also known as cobalamin.

·        ·        The vitamin must be hydrolyzed from protein in order to be active. Hydrolysis occurs in the stomach by gastric acids or the intestines by trypsin digestion following consumption of animal meat.

 

There are only two clinically significant reactions in the body that require vitamin B12 as a cofactor.

  1. During the catabolism of fatty acids with an odd number of carbon atoms and the amino acids valine, isoleucine and threonine the resultant propionyl-CoA is converted to succinyl-CoA for oxidation in the TCA cycle. One of the enzymes in this pathway, methylmalonyl-CoA mutase, requires vitamin B12 as a cofactor in the conversion of methylmalonyl-CoA to succinyl-CoA. The 5'-deoxyadenosine derivative of cobalamin is required for this reaction.

 

  1. The second reaction requiring vitamin B12 catalyzes the conversion of homocysteine to methionine and is catalyzed by methionine synthase. This reaction results in the transfer of the methyl group from N5-methyltetrahydrofolate to hydroxycobalamin generating tetrahydrofolate and methylcobalamin during the process of the conversion.

 

Q20. Describe source, requirement and deficiency manifestations of Vitamin B-12.

A20. Vitamin B12 is not found in plant foods. The main source of B12 in human diet is through animal products like milk, eggs and liver. Vitamin B12 requires the presence of intrinsic factor from the stomach in order to be absorbed in the small intestines. The liver can store up to six years worth of vitamin B-12, hence deficiencies in this vitamin are rare.

B12 is needed for the efficient production of blood cells and for the health of the nervous system.

The inability to absorb Vitamin B12 occurs in pernicious anemia. In pernicious anemia intrinsic factor is missing. The anemia results from impaired DNA synthesis due to a block in purine and thymidine biosynthesis. The block in nucleotide biosynthesis is a consequence of the effect of vitamin B12 on folate metabolism. When vitamin B-12 is deficient essentially all of the folate becomes trapped as the N5-methyltetrahydrofolate derivative as a result of the loss of functional methionine synthase. This trapping prevents the synthesis of other tetrahydrofolate derivatives required for the purine and thymidine nucleotide biosynthesis pathways.

 

Neurological complications also are associated with vitamin B-12 deficiency and result from a progressive demyelination of nerve cells. The demyelination is thought to result from the increase in methylmalonyl-CoA that result from vitamin B-12 deficiency. Methylmalonyl-CoA is a competitive inhibitor of malonyl-CoA in fatty acid biosynthesis as well as being able to substitute for malonyl-CoA in any fatty acid biosynthesis that may occur. Since the myelin sheath is in continual flux the methylmalonyl-CoA-induced inhibition of fatty acid synthesis results in the eventual destruction of the sheath. The incorporation methylmalonyl-CoA into fatty acid biosynthesis results in branched-chain fatty acids being produced that may severely alter the architecture of the normal membrane structure of nerve cells

 

Q21. Write short not on Folic acid and its biochemical role.

A21. The active form of folic acid is folacin.

 

The function of THF derivatives is to carry and transfer various forms of one-carbon units during biosynthetic reactions.

The one-carbon units are methyl, methylene, methenyl, formyl or formimino groups. These one-carbon transfer reactions are required in the biosynthesis of serine, methionine, glycine, choline and the purine nucleotides and dTMP.

The ability to acquire choline and amino acids from the diet and to salvage the purine nucleotides makes the role of N5, N10-methylene-THF in dTMP synthesis the most metabolically significant function for this vitamin.

The role of vitamin B12 and N5-methyl-THF in the conversion of homocysteine to methionine also can have a significant impact on the ability of cells to regenerate needed THF.

 

Q22. Describe source, requirement and deficiency manifestations of Folic acid.

A22.

·        ·        Folic acid is obtained primarily from yeasts and leafy vegetables as well as animal liver. Animal cannot synthesize PABA nor attach glutamate residues to pteroic acid, thus, requiring folate intake in the diet.

·        ·        The body needs folic acid and folates (form of folic acid that occurs in food) to make DNA. Rapidly dividing cells in the blood, the lining of the colon and developing neutral tube need folic acid the most.

·        ·        Folic acid can prevent at least some children from being born with spina bifida or other birth defects.

·        ·        Folic acid might prevent heart disease in adults by lowering levels of an artery damaging substance called homocysteine. Homocysteine is an amino acid that's used to make protein. It could damage arteries. Folic acid along with Vitamin B12 &B6 all are needed to convert homocysteine to other things.

·        ·        Folic acid is also used in the treatment of sprue- a chronic form of malabsorption.

 

Q23. Write a short note on Vitamin C.

A23. Vitamin C is also known as Ascorbic acid. 

·        ·        Vitamin C also is necessary for bone remodeling due to the presence of collagen in the organic matrix of bones.

            Vitamin C is found in fresh fruits and vegetables including citrus fruits. Vitamin C is necessary for the health of the supporting tissues of the body such as bone, cartilage and connective tissue.

Deficiency in vitamin C leads to the disease scurvy due to the role of the vitamin in the post-translational modification of collagens. Scurvy is characterized by easily bruised skin, muscle fatigue, soft swollen gums, decreased wound healing and hemorrhaging, osteoporosis, and anemia.  

Vitamin C is readily absorbed and so the primary cause of vitamin C deficiency is poor diet and/or an increased requirement. The primary physiological state leading to an increased requirement for vitamin C is severe stress (or trauma). This is due to a rapid depletion in the adrenal stores of the vitamin. The reason for the decrease in adrenal vitamin C levels is unclear but may be due either to redistribution of the vitamin to areas that need it or an overall increased utilization.